Gluten-free cottage cheese blueberry muffins in tulip liners in a muffin tin
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High-Protein Cottage Cheese Blueberry Muffins (Secretly Gluten-Free)

Cottage Cheese Blueberry Muffins, start to finish. Tap the video for sound.

Watch more on Instagram @unbelievablygf

Growing up, I was incredibly lucky. Right across the street, our neighbors, the wonderful Baxters, had rows of blueberry and raspberry bushes. My childhood summers were sun-kissed mornings of running over with eager little hands to fill them with juicy berries, straight from the bush to my mouth. Stained fingers and shirts didn’t matter. The taste of fresh-picked berries still carries me right back.

These high-protein cottage cheese blueberry muffins are my love letter to that girl. With my kids’ sports filling every weekend, I wanted something nostalgic and practical: a gluten-free muffin that fuels busy days without giving up taste or texture. They’re soft, incredibly moist and packed with blueberries, and nobody will ever guess they’re gluten-free.

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High-protein gluten-free blueberry muffins cooling on a wire rack

Why These Gluten-Free Muffins Work

  • Cottage cheese: it adds protein and keeps the muffins incredibly moist. You won’t taste it, and once it’s baked you won’t see it either.
  • A splash of buttermilk: my secret moisture magnet. No buttermilk? Stir a little lemon juice or vinegar into regular milk, or use plain Greek yogurt.
  • A 1-for-1 gluten-free flour: I use Bob’s Red Mill 1-to-1 Gluten-Free Baking Flour, which already has xanthan gum for structure.
  • Flour-tossed blueberries: a light coat of flour keeps the berries from sinking to the bottom.
Close-up of golden gluten-free blueberry muffins bursting with blueberries

Let It Rest, Baby

This is the most important step for gluten-free baking that nobody can detect. Gluten-free flours absorb liquid much more slowly than wheat flour. If you bake the batter right away, the flour hasn’t had time to hydrate, and you can end up with a gritty, flat muffin. Give the batter a rest before it goes in the oven. The flour soaks up the moisture, the batter thickens, and the muffins bake up tender, with tall, bakery-style domes.

It’s the same rule I follow for almost everything I bake gluten-free. Let it rest, baby.

A batch of cottage cheese blueberry muffins on a red gingham towel

Tips for Bakery-Style Muffins

  • Don’t overmix. Fold the dry ingredients in just until you can’t see flour.
  • Use a double cookie scoop so every muffin bakes evenly.
  • Press a few extra blueberries on top before baking for a prettier muffin.
  • For crunch, sprinkle the tops with coarse sanding sugar before baking. For something more indulgent, finish cooled muffins with a swirl of cream cheese frosting.
  • Raspberries work beautifully too. Is there such a thing as too many berries?
Gluten-free blueberry muffins topped with cream cheese frosting

Storing and Freezing

Keep muffins in an airtight container at room temperature for up to 2 days, or in the fridge for up to 5 days. To freeze, wrap them individually and freeze for up to 3 months. Warm a frozen muffin in the microwave for 20 to 30 seconds for an easy grab-and-go breakfast.

Want more? Grab my free gluten-free recipes, and tag @unbelievablygf when you bake these. I want to see those blueberry-stained fingers.

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Gluten-free blueberry muffins fresh from the oven in a muffin tin

What I use: Bob’s Red Mill 1-to-1 gluten-free flour, vanilla bean paste, a nonstick muffin pan and a digital kitchen scale.

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High-Protein Cottage Cheese Blueberry Muffins (Gluten-Free)

Recipe by Lisa Belle
0.0 from 0 votes
Course: Breakfast
Servings

12–15

muffins
Prep time

15

minutes
Cooking time

25

minutes

Ingredients

  • ¼ cup (57 g) butter, melted (or your preferred oil)

  • ½ cup (100 g) cane sugar (or monk fruit sweetener)

  • 1 teaspoon (5 g) vanilla bean paste or vanilla extract

  • ¼ cup (60 ml) buttermilk

  • 2 large eggs (100 g)

  • 1 cup (240 g) plain whole-milk cottage cheese (I like Good Culture)

  • 1½ cups (180 g) Bob’s Red Mill 1-to-1 Gluten-Free Baking Flour, plus a little for the berries

  • 1 teaspoon (5 g) baking soda

  • ¼ teaspoon (1.5 g) salt

  • ¼ teaspoon ground cinnamon (optional)

  • 1 cup (150 g) fresh blueberries

  • Coarse sanding sugar, for topping (optional)

Directions

  • Heat the oven to 375°F (190°C). Line a muffin tin with liners.
  • Mix the wet ingredients: In a large bowl, whisk the melted butter, sugar, vanilla, buttermilk and eggs until smooth. Gently fold in the cottage cheese until fully combined.
  • Add the dry ingredients: Sprinkle the flour, baking soda, salt and cinnamon over the wet mixture. Fold with a rubber spatula just until combined. Don’t overmix.
  • Add the blueberries: Toss the blueberries with a little flour to lightly coat them, then gently fold them into the batter.
  • Let it rest: Cover the bowl and let the batter rest in the refrigerator for at least 30 minutes so the gluten-free flour can fully hydrate. Don’t skip this step!
  • Fill the liners: Use a double cookie scoop or spoon to fill each liner about ¾ full. Sprinkle the tops with sanding sugar, if using.
  • Bake 23–25 minutes, until a toothpick inserted in the center comes out clean.
  • Cool completely in the tin before removing. Frost with cream cheese frosting, if you like.

Notes

    Resting the batter is the key to undetectably gluten-free muffins: gluten-free flour absorbs liquid more slowly than wheat flour. Resting time is not included in prep time. No buttermilk? Use regular milk with a little lemon juice or vinegar stirred in, or plain Greek yogurt. Tossing the blueberries in flour keeps them from sinking. Lisa Belle Marsh | The Undercover Gluten-Free Baker

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